Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857609.1_cds_XP_016513487.1_26027
CDS Infomation

[gene=LOC107830452] [db_xref=GeneID:107830452] [protein=DNA topoisomerase 1-like] [protein_id=XP_016513487.1] [location=join(10004..11113,11198..11392,12311..12391,13116..13175,13295..13389,13500..13656,13764..13889,14312..14392,14507..14597,14687..14820,17127..17195,17284..17373,17549..17652,17731..17899,18018..18086)] [gbkey=CDS]
Sequence

ATGGCTGTTGAGGCTTTTTCCAAAACAAAGTTGATGGCGGAAGTTGATGATGATGATGAT
GATATGCCCTTAGTTTTCAAACGTAGTACCACATCAAAGCAGAATCAGTCAAATTCATCA
TCTCAGAAGCAGGATGGACGATCAGGGCGGCAAGTTTCTGATGTACGTTCTCCTAATGGC
CAGAACTCTAGTGCTCAGAAAGTTAAGGCAGGCACCTCTTCTAAGGCTTCTCCGGCAGTT
TCACCTTTCACTAGTCCAAAAGCATCACCTTCATCAAGCAGGATATCTCCTGCACCAAAC
TCAAGGCCATCAGCCTCTGCGGGTAATCAGGCAAAAAATGTTAATCAACAATCCAAGATT
GTTCCTAATGAGCCAAAGCAAGCTGTTGAACCAAAATCTGGACCTAATGATGAAGCTGAG
GACTCTGAAGATGATAAACCATTGAGTGCTAGGCTTTCTTCTGGGTTATCTAAGAGCATT
TCTAGTCATGCCAACAAAGTGCTTGGTACTTCAGCATCAGTTCAAAAGTCTAGACCTCCC
AAAAAAGAAGATTCAGATGATGAAATTCCCTTAGCGTCAAGGTTTCAATTGAAGTCCAAT
GCAGGGGCTTCCACGAGCAAGTCTTCTAATTCTGAAGAAGTTAAGCCTAAAATTCGGCAA
AATGGTTTGCCATCTACAACAGTTTTAAGTAAGAGACCCCCTGGTGATGTAAAGTCTGCT
GCTCAGGCTTCAGTTAAAAAGCTTAGGCTTTCTGATGCATCTACACCTGTTTCGATTAAG
CAAGCATCTGTTAAACCTGAAAAAAAGACAGAGGACGACGACGATGACGTTCCTATATCT
CAGAGAATTAAAAAGTCAGTAGCTTCAGCTAGTAAAGTGTCATCTACAAAGAAAGCAACC
AAAGTTGTTTCGTCGTCGATGAAAACAAAGAAGAAATTGAAGAAATCCAAGTACTCTAAG
TCATCGAAACTGCAGCCAAGCTCTGGTGAAGGGCAAAAATGGACTACATTGGTTCACAAC
GGTGTGATTTTTCCGCCTTCATATAAGCCTCATGGGGTTAAGATGCTCTACAAGGGAAAA
CCTATAAATCTGACTCCAGAGCAGGAGGAGGTTGCAACAATGTATGCCGTGATGTTAGAC
ACTGAGTACATGAGTAAACCGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATA
CTAGGAAAAAACCATGTCATTCAAAATTTAGATGACTGTGATTTTACCCCAATATATGAG
TGGCATCAAAGTGAGAAGGAGAAGAAGAAGCAAATGAGTACCGAAGAGAAGAAGGCATTG
AGAGAAGAGAAACTCAAGCAAGAAGAGAAGTACATGTGGGCTATTGTTGATGGTGTTAAG
GAGAAGGTTGGGAACTTTCGGGTTGAACCACCTGGACTGTTTCGTGGCCGTGGAGAACAT
CCAAAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATTACAATAAATATTGGA
AAGGGTGCTCCAATACCGGAGTGCCCCATCCCTGGTGAAAGATGGAAGGAAGTAAGGCAT
GACAACACTGTGACATGGTTAGCTTTCTGGAATGACCCTATCAATCCAAGAGAATTCAAA
TACGTTTTCCTGGCAGCCAGTAGTTCCTTGAAAGGGCAAAGCGATAAAGAAAAGTATGAA
AAAGCAAGGCGTTTAAAGGATTATATTGAAGGCATTAGATCTGCATATACAAAGGATTTT
ACAAGTAAAGATCCTGTGAAGCGTCAGATCGCAGTTGCAACTTATCTTATTGATAAATTA
GCTCTGAGGGCAGGGAATGAGAAGGATGACGACGAAGCTGATACAGTTGGTTGTTGTACT
TTAAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGTTCGATTTTCTTGGT
AAAGATTCTATCAGGTATCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCCATT
CAACTGTTCCGAAGTGGAAAAAAGGGCGGTGATGATCTTTTTGACAAGCTTGACACGAGT
AAGCTCAATGCCCATCTAAAGGAACTCATGCCAGGCCTGACGGCAAAAGTATTTCGTACA
TATAATGCATCTGTTACACTGGAGCAGCAATTGACCAAGCTGACACAAGGTGGAGAGCTC
GCTGAGAAAGTTGCGGTGTATAATTTGGCAAATAAAGAGGTTGCAATAATTTGTAATCAC
CAGCGTAGTGTTTCAAAGTCGCATAGTGTACAAATTTCAAAGTTGAATGAGAAGATAGAT
GAATTAAAGGCTCTTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAG
CCTCCATTGAAGGGCGCTGATGGCAAGGCAAAGAGGAACTTGGCCCCTGAAGCATTACAG
AAAAAGATGGATCAAACGAATGCGAAGATTGAGAACATAGAGAAGCAAATAGAAACGAAA
GAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATCTGGATCCTAGGATC
ACAGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGATGTTCAACAAGTCTCTT
CTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCAAGCTTCACATTCTAA

Peptide Sequence

PEP ID

XP_016513487.1
PEP Infomation

PREDICTED: DNA topoisomerase 1-like [Nicotiana tabacum]
Sequence

MAVEAFSKTKLMAEVDDDDDDMPLVFKRSTTSKQNQSNSSSQKQDGRSGRQVSDVRSPNG
QNSSAQKVKAGTSSKASPAVSPFTSPKASPSSSRISPAPNSRPSASAGNQAKNVNQQSKI
VPNEPKQAVEPKSGPNDEAEDSEDDKPLSARLSSGLSKSISSHANKVLGTSASVQKSRPP
KKEDSDDEIPLASRFQLKSNAGASTSKSSNSEEVKPKIRQNGLPSTTVLSKRPPGDVKSA
AQASVKKLRLSDASTPVSIKQASVKPEKKTEDDDDDVPISQRIKKSVASASKVSSTKKAT
KVVSSSMKTKKKLKKSKYSKSSKLQPSSGEGQKWTTLVHNGVIFPPSYKPHGVKMLYKGK
PINLTPEQEEVATMYAVMLDTEYMSKPQFKENFMNDWRKILGKNHVIQNLDDCDFTPIYE
WHQSEKEKKKQMSTEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH
PKMGKLKRRIRPNDITINIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINPREFK
YVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKL
ALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAI
QLFRSGKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASVTLEQQLTKLTQGGEL
AEKVAVYNLANKEVAIICNHQRSVSKSHSVQISKLNEKIDELKALLEEFKVDLARAKKGK
PPLKGADGKAKRNLAPEALQKKMDQTNAKIENIEKQIETKEELKTVALGTSKINYLDPRI
TVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF

Transcript Sequence

Gene sequence data has not been registered.